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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify … to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific Computing Center (NERSC) …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Georg Rath
… Mr. Rath has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance … to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant …
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First Monoploid Reference Sequence of Sugarcane
… sequence. For the highly polyploid sugarcane, an international team of researchers has successfully assembled a … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more …
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