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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… The Science Cyclic di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with … soil, and the gut. To better understand the dynamics of this molecule, researchers developed the first … for the E. coli cyclic di-GMP binding protein, Ec YcgR, within the Nano-lantern scaffold. They then mined sequence …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool … their tool before felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… processes. The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The … spanning a 1000km section of the Rocky Mountains. This represents the first study of this nature.  The phyllosphere … Robert Bowers . She contributed to the analysis of mobile genetic elements across all of the metagenomes. Learn more …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… especially relevant to living on a changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part … born, of about 2 billion people on the planet, to you know, within my lifetime, we should hit around nine or 10, which …
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Four Researchers Join JGI User Executive Committee
… Greg Bonito of Michigan State University, Jonathan Eisen of the University of California, Davis, and Michael … at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on … based on his own accepted proposals. He sees his priorities within the UEC as providing advice on policies and …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion … three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the Computing … are at the core of many environmental processes, and their genetic makeup forms the basis of their behavior in the …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong … that workforce in genomics, including JGI, is not representative of the diversity in the population, especially here in California. …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… The Berkeley Lab Biosciences Area Entrepreneurship Program presents… Eyes on the Prize – Launching & Sustaining … August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted Hoppy … Walnut Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , …
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Open Frameworks Training the Next Generation of Scientists
… Myco-Ed :  The Mycological Curriculum for Education and Discovery is a microbiology program that provides training and … contributions—including sequencing services and analysis—to participants. Over the past two years, Myco-Ed has … of Energy Systems Biology Knowledgebase). Myco-Ed is supported by the JGI Director’s Science Program award …
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Kjiersten Fagnan
… fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and … and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead … Distinguished Speaker at IBM Research in Almaden where she presented work related to distributed data and workflow …
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Emiley Eloe-Fadrosh
… Emiley Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to … BS, Biochemistry and Cell Biology, University of California, San Diego … uncovers gaps in amplicon-based detection of microbial diversity. Nature Microbiol. 1: 15032. Eloe-Fadrosh EA, et …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the … M., and Yang, X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application …
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