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2024 Progress Report
… bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … biological and environmental systems. We optimize our service to the community through responsibly managing our people … use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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Hiroshi Otani
… actinomycetes. His research activity is focused on developing and implementing new technologies and …
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Atif Shahab
… management. He has worked at several renowned institutions, developing solutions for large-scale sequencing projects and …
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What Happens Underground Influences Global Nutrient Cycles
… Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  Environmental … of the JGI’s Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in … gene functions that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the … Molecular Sciences Laboratory (EMSL), a DOE Office of Science user facility. The work was partly enabled by …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. … 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice on normalizing metabolomic data from a whole microbial …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… tool called geNomad that identifies and classifies mobile genetic elements based upon their gene content and their … work included investigating sphagnum moss and the role the plant’s sex plays in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . …
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Training the Next Generation of Talent
… of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on … Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a …
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Webinar: PhycoCosm Tutorial
… getting these data on our system. If it’s not based on the gene model, that should be ok generally. We can work with … devoted to algae (photosynthetic eukaryotes not including plants), so populated by algal genomes thus defined. We also have some reference plant genomes to help with comparative studies of algae and …
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Massie S. Ballon
… and the DOE mission, as well as help cultivate the next generation of genomic research users, partners, and … translating science, including crafting technical reports, developing educational content, and writing feature … to Berkeley Lab’s Stewardship Community of Practice. …
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