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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … of virus-host interactions opens the possibility of using phages to engineer microbial communities. One day, … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of … lab had previously collaborated with the JGI on a proposal using this approach through the Emerging Technologies …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. … , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected … of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … and giant viruses belonging to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. As a result, the giant virus …
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Three Join the JGI User Executive Committee
… Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest … of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a … The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … 637675 ‘SYBORG’), as well as the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … such as the Copper River Delta wetland pond, cycle carbon. Using plots at the Harvard Forest long-term warming …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by … P. virgatum on Phytozome … Plant Dataset …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … Nigel Mouncey is the Secondary Metabolites Program head as well as our JGI Director. Click to learn more about the program's areas of focus, major initiatives and more.  …
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