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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these untapped metabolic …
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2022 Progress Report
… the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … Science user facility at Lawrence Berkeley National Laboratory (Berkeley Lab), is to become the leading integrative genome science user …
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A More Intuitive Phytozome Interface
… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome accessible as an interactive website. Since May 2019, … genomes in Phytozome. The Phytozome team is committed to helping users make a successful transition from v12 to v13.  …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set … shift in data access. Users were previously limited to accessing data sets within groups, such as plants (via …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the … Computing Sciences Area at Lawrence Berkeley National Laboratory (Berkeley Lab) describes it, JGI researchers have also …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from the JGI … Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … 5,000 times the average size. Woyke’s  Single Cells Group helped better-understand what the sulfur-oxidizing, carbon …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the … a primary component of peatlands, processes  carbon can help maximize peatlands’ potential as carbon sinks and …
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UC Merced Interns Reflect on Their JGI Summer Projects
… with JGI scientists on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with their mentors to practice and develop presentation skills as well as … students to embark on a career in genomics, and to help foster a diverse future workforce in science. Since the …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Mo Kaze is a University of … Program was developed between the two institutions to help train the next generation workforce.     …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But human-induced climate change , a new … properties,” said study coauthor Igor Grigoriev , JGI Fungal & Algal Program Head. “But still, there are no …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s … of its flagship education program with UC Merced. JGI Director Nigel Mouncey and program organizers Wang, Visel and … illness, disease risk, and treatment response due to fungal genomics internship with Igor Grigoriev. Portia Mira …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … ) describes how understanding these nutrient cycles can help researchers contribute toward developing the … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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