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Kjiersten Fagnan
… entire data life cycle through resources including the JGI portals, and our broader data ecosystem. …
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Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments
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The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings
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Diversity and Distribution of Hydrocarbon-Degrading Genes in the Cold Seeps from the Mediterranean and Caspian Seas
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Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, inviting the … and validation of the functional potential of these new lineages. …
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Marine Microbe Contains Multitudes
… periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in … team responsible for piloting and operationalizing new genomic technologies, integrating automated liquid … Jangir Selimkhanov, Leo Baumgart, Susan E. Cohen, Susan S. Golden, Natalie A. Cookson, and Jeff Hasty. "A microfluidic …
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Gene Expression: From On-Off Switch to Dial
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces cerevisiae) to … they are historically well-studied, Alper’s team discovered new gene targets to more efficiently grow on these sugars. …
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You Can Move, But You Can’t Hide
… Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by killing … also optimized for speed, i.e., it can identify millions of new viruses and plasmids quickly, even in massive datasets. …
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Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes
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Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
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