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Digging into Microbial Ecosystems Deep Underground
… the pandemic, they took the JGI on a sampling field trip. One of the questions they’re looking at: the role viral …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… species will vary in activity as well; at any given time, many species in a community may be in ‘low power … weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers can … a semi-automated, standardized process to carry out the onerous SIP sample processing. Generating these datasets …
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Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan … to address some of the most pressing challenges of our time. For more information, please visit  …
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Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide
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Accelerating Metagenomics Discoveries with Deep Learning
… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers … to address some of the most pressing challenges of our time. For more information, please visit  …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… surrounding the root) samples from the plants at the same time each week over the full life cycle of the plant. The … For the study, the team grew two sorghum varieties: one that tolerates better pre-flowering drought stress and a … better after flowering. All plants were subjected to one of three conditions during their lifecycles. In the …
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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The Big Deal About Short Plants
… sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Filling in the Plant Tree of Life
… genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
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Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil
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