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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … biosynthetic gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( … (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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At the Forefront of Terrestrial Virus Research
… Gary Trubl is finishing his PhD in Microbiology at The Ohio State University, co-advised by Drs. Virginia Rich and Matthew … He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities …
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Matt Blow
… In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome Trust … and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental …
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Leo Baumgart
… doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … technologies, integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into … sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. …
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Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value of taking a look at the AT … metabolism, this team built a phylogenetic tree using bioinformatic software called FastTree and identified 62 …
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Dispatches From JGI Interns
… Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, impactful research projects …
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Extracting the Secrets of Secondary Metabolites
… (Clustered Regularly Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due to the lack of robust tools available … of interest. Using CRAGE to domesticate target microbes, users of the U.S. Department of Energy (DOE) Joint Genome …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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De novo Nanopore read quality improvement using deep learning
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