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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is … hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which …
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IMG Webinar Series
Find a series of webinars related to our Integrated Microbial Genomics & Microbiomes …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic … it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. …
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The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   … field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will …
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