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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a … food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show … more reusable, and more insightful, for the future of studying microbial communities.   …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology discoveries. (Pictured … Wang, Sravanthi Tejomurthula, Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true … tool to help researchers assess and improve the quality of metagenome-assembled viral genomes. The paper appeared in  … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … the DOE Office of Science user facility with broader national efforts to promote and stimulate a bioeconomy, where …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or …
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Refining the Process of Identifying Algae Biotechnology Candidates
… biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest for use as … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that …
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JGI announces 2024 New Investigator portfolio
… we look for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted … savviness of microbial ecosystems at the forest floor and along ocean shores. Their results could bring key insights … and the ways organisms can adapt to climate change and environmental disturbances. Proposals are accepted year-round for …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … floor lobby. People walking into the lobby have many reasons for being there, but they’re not always immediately …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. In March 2008, the genome sequence of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful … DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … attempt to put them back into the original genomes. These metagenome-assembled genomes (MAGs) that came from shotgun …
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