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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, underground … this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large will …
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Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant … the JGI, Dr. Yoshikuni also manages the Synthetic Biology Pathway Engineering group. His research focus includes …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce … crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … or natural product called T-toxin. And this kills corn plants. So I became very interested in toxins – phytotoxins …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … While an ever-increasing number of phage and virus genomes have been …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … The team learned that some bacterial families carry genes for degrading monoterpenes such as α-pinene, as well … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Natural Prodcast Episode 22: Alison Narayan
… you want to have enzymes that you can apply in a route towards many different compounds in the same family. And so … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: … robot, which is essentially a little arm with a multi-channel pipette and you can write a program that tells …
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Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley … and seek to establish with our stakeholders. In working toward a shared vision with members of the JGI advisory …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer … a variety of programs to help inspire and train the next generation of STEM professionals. Students can apply for … laid in sort of, in analysis. So sort of more computational generally. But yeah, no I love research, I've never done …
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