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… and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … of the results were unexpected. For example, lichenologists generally anticipated that in this symbiosis going back … would have occurred between the partners. Yet the team found none. Instead, the partners stubbornly maintained …

… and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: …

… We also develop methods for efficient QA/QC based on next-generation sequencing technologies including PacBio and … applications.  We are interested in:  characterizing novel enzymatic activities using phylogenomic driven …

… of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … were designed for samples from humans or mice,” said Sharon Greenblum, a co-first author on the paper and computational … binding sites are scattered widely across genomes, the team found only a subset were functionally relevant. Those …

… MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve … 590: 438-444. Mamidi, S et al. 2020. A genome resource for green millet Setaria viridis enables discovery of agronomically …

… Novel study looks at microbiomes in aerial surfaces of … equipped to do on the leaf surface. More specifically, they found that microbial community composition and functional … The team learned that some bacterial families carry genes for degrading monoterpenes such as α-pinene, as well …

… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … change. “With this dataset I can see where every microbe is found, and how abundant it is. That’s very useful for my … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …

… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The … that were missed using traditional approaches. This novel form of intermediate expression, when used in addition … on these sugars. To demonstrate the versatility of this novel technique, Alper and his team also applied this method …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into … clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene or multiple small genes assembled totaling 5-10kb in …

… conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … uncover these hidden biochemical resources by exploring the genetic pathways responsible for their synthesis. The … developing computational tools for predicting biosynthetic gene clusters (BGCs), advancing pathway analysis, …