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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … a thioesterase. And so that thioesterase at the end of this large multimodular protein allows for release from the DNA, … So cis versus trans in order to cyclize at that small of a ring, which is highly unfavorable. DAN: Oh, I did …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … IMG/VR (Viral Resources.) Launched in 2016, IMG/VR is the largest publicly available collection of UViGs by … a  2019 paper , the team applied computational methods and analyses developed for JGI-enabled research involving …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses infect bacteria, …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Nikos Kyrpides
Science. His group is developing novel methods for enabling large-scale comparative analysis, as well as mining and … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Cataloging the Microbes that Manage the Health of River Systems
… microbial resource that provides information at multiple scales from genes to the community level. The Impact Rivers … several access points for these datasets. As part of a larger microbiome data integration hub, these datasets are … explore and reuse the data from the GROWdb for comparative analyses with their own data on the KBase platform, without …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … system. … IMG/PR is a plasmid genome resource featuring the largest collection of plasmids automatically identified from … genomes, and to conduct comparative and genome-centric analyses of fungi and community annotation. … Phycocosm is a …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … was an opportunity to adapt my existing skill set to a new scale, which presented a host of interesting and ultimately … STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a high …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … around countries. And I was actually in Croatia on a small island off the coast in the Adriatic Sea, and I … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a … will help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted at any …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not …
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