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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … drug discovery has been a major driver for natural product biosynthesis. And probably a lot of the people and the … metabolism is based on primary metabolism. It’s an evolution of primary metabolism. So a lot of the genes and …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status … Investigators with research interests that integrate genomics with nanoscale science in the area of critical …
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Natural Prodcast Episode 15: Katherine Duncan
… to sort of compare, conceptually, that data with genomics and the kind of things that I do with genome … are all really closely related things in terms of, like, evolution, in terms of taxonomy– produced really different … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes …
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Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 … The study also confirmed that mitochondrial and nuclear evolution are closely aligned across fungi, validating …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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JGI Mural
… The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references … to advancing the frontiers of environmental and energy genomics. Click on the images below to learn about the …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … and has the capability to store and accurately display eukaryotic and viral BGC sequences. Expansion of the SMC to …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … arc. And so, you know, definitely there has been a strong evolution in terms of the way the group thinks and that the … to be provocative, I have noticed that many talks about biosynthesis start by saying “Organisms contain many gene …
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