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Accelerating Metagenomics Discoveries with Deep Learning
Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … found in nature, allows machines to “learn” features. State of the art algorithms can perform astonishing degrees …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… next firestorm. The majestic sentinel oaks of the Golden State have been succumbing to a pathogen. This ‘“alien’” … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … witnessed how their once stout oaks, the anchors of their properties , became stricken by the disease, eventually …
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Partnerships: Myco-Ed
Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist … from a growing audience. For consistency and to reduce teaching-lab costs, we have partnered with the …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … and kept seeing what looked like mistakes by the gene prediction algorithms. I decided to dig in a little deeper, … of basic research in the physical sciences in the United States, and is working to address some of the most pressing …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and environmental solutions, fostering a bioeconomy powered by nature’s resources. … The Fungal & Algal Program … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … slated to lead the workshop again in the 2022 program. “I’m excited — I’m always glad to pay it forward,” said Wint, now …
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Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
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The United States of America and Scientific Research
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … the shelter-in-place. ††† Actual Operation = 69 days due to reduced lab activities related to the return-to-work plan in … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … the PI and proposing team. The work plan is formalized in a Statement of Work document. At the completion of a project, … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using …
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LmbE proteins from Bacillus cereus are de‐N‐acetylases with broad substrate specificity and are highly similar to proteins in Bacillus anthracis
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