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JGI@25: Following Fungi that Pry Apart Plant Polymers
… number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … these organisms use to bust biomass apart. She and her team find these fungi, and their enzymes, primarily in … it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … regarding the effects of climate change. Summary A team led by researchers at the U.S. Department of Energy …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have … miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the University of Texas at Austin …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … genome was detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s Obsidian Pool hot …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department … hosted three undergraduates and seven graduate students from UC Merced through their long standing internship program. In just two months, the …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … and what they do. Summary The name PhycoCosm stems from the Greek phykos , meaning seaweed. Seaweeds are algae, … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished genome derived …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new … light microscope, and fickle, often hiding their function from even the most determined scientist.  Recent work in  … unknown or uncertain function. These genes would allow the team to express this library of encoded proteins at high …
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Matt Blow
… the User Support Analysis group. He received his Ph.D. from the Wellcome Trust Sanger Institute and Cambridge … Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome … … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage (from PacBio) Best practices for High Molecular Weight DNA …
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