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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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JGI & KBase at PAG XXVII
… Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics research. Click here to …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … (IGB). Said Michael Brandt of Ray, “You took the essential nature of the vision for that building, incorporated that in …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also … like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … JGI, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial … at University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying … 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) proved to vastly reduce labor and improve …
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Charting Progress toward Professional Goals
… at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of STEM … with an experienced researcher who serves as their mentor. By contributing to projects that will help them build skills and tools, they …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other ways to produce energy, using a process called fermentation. To …
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Fungus Fuels Tree Growth
… symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … found among and within poplar trees, and in an effort to understand its influence on the plant, a team of scientists studied what happens to the tree’s physical traits and gene expression when the …
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Tracing the Evolution of Shiitake Mushrooms
… fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and … samples, this study also tracks the enzymes these fungi use to break down wood, and compares genetic diversity between … Impact Lentinula mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad … decades, though, many viruses have been somewhat invisible to the sampling experiments probing Earth’s ecosystems. …
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