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Introducing New Members of the JGI User Executive Committee
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Training the Next Generation of Talent
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An Integrated Dataset to Understand Ecosystem Interaction
… for adaptation within the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, … LLC, for the U.S. Department of Energy under contract DE-AC05-00OR22725. The work ( https://doi.org/10.46936/10.25585/60000017 ) …
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A One-Stop Shop for Analyzing Algal Genomes
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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … Patrinos opened with this quote from Thomas Kuhn in his 25th Anniversary presentation. “Those driven by new tools and … explained. As an illustration of this, he noted the new 25th anniversary mural that local Bay Area artist Nigel …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Agency , methane gas warms the atmosphere as much as 25 times more quickly than even carbon dioxide. The EPA … resources from laboratories around the world, encompassing 54 researchers from 14 organizations across nine countries. …
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New and Improved: Eucalyptus Reference is Now Accessible
… genome assembly and annotation. Genome contiguity of the 2025 phased reference and 2014 diploid genome reference was … had a gene annotation completement level of 93.8%. The 2025 assembly has a gene annotation completement level of … two assemblies, the researchers also noticed that the 2025 haplotype-phased assemblies are 70–90 Mbp smaller than the …
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DAS Tool for Genome Reconstruction from Metagenomes
… (CAMI) Challenge, a competition launched in 2015 by a community initiative, with varying numbers of genomes … to tackle metagenomes with low (40 genomes) to high (596 genomes) complexity. The environmental datasets included … were able to reconstruct 79 minimally contaminated (<5%) draft genomes to >70% completeness. Of those 79 genomes, …
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Soil virus offers insight into maintaining microorganisms
… Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of crystalized samples cloned and synthesized … of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down chitin. A … Research program and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). The crystal …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander Probst, Stephan …
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