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Dispatches From JGI Interns
Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in … the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … group of decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest … Additionally, these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He … carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual evolution characterizes … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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New Tricks with Old Bones
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JGI Announces 2025 New Investigator Portfolio
Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, Yuxi Guo, … of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any … of biochar on rhizosphere microbiomes, and the metabolic pathways of algae. They will harness JGI capabilities such …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s … 5(3), 431–442. Yang, J., Rubel, O., Prabhat, Mahoney, M., & Bowen, B. (2015). Identifying important ions and … Proteomics analysis of human skeletal muscle reveals novel abnormalities in obesity and type 2 diabetes. … Google Scholar. … Education … Awards and Honors … Selected Publications …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, researchers take …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy … plants are diploids with two copies of each chromosome, one inherited from each parent. Some plants, known as … genes provided by these chromosomes can contribute to novel traits.  M. sinensis is a tetraploid, with four sets …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
Gary Trubl, a virologist and postdoc at Lawrence Livermore National Laboratory, is … and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Gone with a trace: cataloguing the disappearing gut microbes
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