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Open Frameworks Training the Next Generation of Scientists
… participants. Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase … It’s a key problem to solve because fungi are very diverse organisms with potential biotechnology applications in a …
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Mike Sneddon
… a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform … discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The … Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic coordination of multiple …
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Building on Experience, With a Twist?
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than …
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Career Research Program (ECRP) award, which is also focused on single-cell and spatial transcriptomics …
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A Model System for Perennial Grasses
… model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … for developing methods for converting plant biomass into sustainable fuels for cars and jets. By studying a close … to switchgrass. Summary Rising global temperatures are causing extreme weather events, ranging from prolonged …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… these bacteria evolved could help inform engineering microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Dispatches From JGI Interns
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of research proposals integrates … Institute and Molecular Foundry are DOE Office of Science user facilities. They provide researchers leading approved … in a collaborative, multidisciplinary environment. Users and members of their research teams work onsite at TMF …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… novel technique to access high-quality genomic information using minute quantities of DNA derived from individual … microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics and single cell …
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Georg Rath
… the lead of the infrastructure team and the chair of the Cluster Advisory Group (CAG), he sees his role as using the substrate provided by LBNL, where possible, and … JGI compute infrastructure is managed, through the Cluster Advisory Group composed of representatives from JGI’s …
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Crops as Tough as World Cup Turf
… In our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: … from grasses into other crops.  One grass they studied just happened to be the same species that covered World Cup …
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