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Fungus Fuels Tree Growth
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, …
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Effects of Polar Light Cycle on Microbial Food Web
… Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Laboratory (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, …
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Building Wet and Dry Lab Skills
… on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running … Alabama A&M majoring in Biology, and I'm also an intern at JGI with Yi and Sharon. Yi Zhai : Hi, everyone. My name is … how to run Dori, which is a compute cluster owned by JGI, and used Jupyter notebook for a programming environment …
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Team Science Reveals Important Protein in Poplar
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator program , … flavonoids. Conversely, when the gene was overexpressed, those plants had stunted growth, weaker cell …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and … to fit the needs of the dynamic environment that is JGI. Infrastructure built by his team is unbureaucratic and …
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Evolution of a Fungal Gene Expression Regulator
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of … mechanisms of genome-wide regulation and cataloging them in JGI’s fungal portal MycoCosm. …
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Busting the Unbreakable Lignin
… Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genomic capabilities. Summary In a project supported by the JGI Community Science Program, University of California (UC) … Part of the work was done through a summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision … to the resources and disciplines advanced by the JGI, we seek to inspire more students to enter the science, … and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds …
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