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… The Secondary Metabolism Collaboratory encourages user engagement. … compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a set of … within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal contained …

… Uncovering associations between plant roots and fungi that can help or harm plant host … Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … supported by the Office of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP …

…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … of Energy, Office of Science, Biological and Environmental Research, Early Career Research Program awarded …

… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …

… assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … WIP proposal ID: 508017, Myburg, Wegrzyn, Borevitz) conducted by the US Department of Energy Joint Genome …

… Hao Chen, Jay Chen, Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … Woyke , the JGI’s User Programs Deputy. “These proposals highlight the creativity of our user community and their …

… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The … mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, high-temperature (thermophilic) microbes are of interest for …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible … On Jennifer Doudna's Nobel Prize …

… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … repository, making curated microbiome metadata that follows community standards freely available, and enabling … isolation information is available — enabling metadata-driven scientific discoveries. GOLD’s  public Application …

… the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. … activity is focused on developing and implementing new technologies and methodologies that facilitate discovery … H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional machineries. Nat Commun. …

… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom …

… of British Columbia, Philip Benfey at Duke University and Uwe Ohler at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist …