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JGI & KBase at PAG XXVII
… place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … This work was supported by the U.S. Department of Energy, Office … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… bacteria to produce ethylene and more.  Microbes excel at recycling the abundant miscellanea of their surroundings. … in point: for us, the smell of the ocean simply signals we’re near the beach. For bacteria, that salty, slightly … as a two-part complex, along with a regulatory accessory protein and multiple metallocofactors. Given the MAR system’s …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of … viruses (NCLDV) supergroup. As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles … focused on the conifer needle microbiome. The phyllosphere, which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past … This research was supported by the National Science Foundation (NSF) under grant DEB-1442348. …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s … making it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, … 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the world … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short final presentations attended by more than 75 JGI staff. According to Axel …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with … Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  …
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Team Science Reveals Important Protein in Poplar
… for engineering bioenergy crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, … Synchrotron Light Source (NSLS-II), the Molecular Foundry and the Joint BioEnergy Institute (JBEI.) The JGI team …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will … P. virgatum on Phytozome … Plant Dataset …
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