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Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work … to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … University. The CODCC aims to coordinate data acquisition, analysis, and visualization through a sustainable, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. … X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 …
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Richard Fox
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 … tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … which sgRNA sequences were reliable. In an elegant, quantitative screen, the team designed a pool of sgRNA …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … come pre-annotated using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your …
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. … Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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