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JGIota: The Algae Nicknamed ‘Chlamy’
… – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on … Merchant is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental Research … the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) …
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A User-Centered Approach to Accessing JGI Data
… launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for … limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made … and NMDC? A: We have reached out to KBase regarding use of our search API. They have expressed an interest in using …
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Nigel Mouncey
… joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of … and Bioprocessing R&D Director and Leader at Dow AgroSciences in Indianapolis. During his time in industry, Dr. … to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI …
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JGI@25: Roots of a Mutualist Relationship
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship …
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Defining a Pan-Genome for Antarctic Archaea
… broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are … metagenome data generated from samples collected at four Rauer lakes to assess population level genomic … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the human language—are well positioned to help enhance our understanding of life’s genomic code, advancing DOE … And since microbial genomes are simpler to model than large plant or animal genomes, they are a good starting point to …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science … complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and resources.   Director's Perspective     …
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Webinar: MycoCosm Tutorial
… for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also … working to address some of the most pressing challenges of our time. For more information, please visit  …
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