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Potential Biocontrol Activities of Populus Endophytes against Several Plant Pathogens Using Different Inhibitory Mechanisms
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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Host-specific adaptation in Fusarium oxysporum correlates with distinct accessory chromosome content in human and plant pathogenic strains.
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… single step, directly into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … select group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … most widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science … complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and resources.   Director's Perspective     …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. … Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab informatics. Prior to joining JGI in late …
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of … episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental Research … the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Katherine Louie
… biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and Chemical Engineering.  DOI: … Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie …
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