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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough … the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracing the Evolution of Shiitake Mushrooms
… fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and … structures, as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Fungi That Survive In Antarctica
… and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh … survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to understand them better. …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. … genomes, but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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How to Target a Microbial Needle within a Community Haystack
… complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved upon a tool that …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … later dubbed Saganbacteria. At the same time, working with researchers from the Bigelow Laboratory for Ocean Sciences, …
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Expanding Virophage Diversity
… in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their … assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial … is an allodiploid hybrid of two species, similar to a mule, but that is still able to reproduce asexually … optimization for enhanced lipid production. Also notable, researchers found it is missing 33 genes thought essential …
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Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide‐binding site leucine‐rich repeat (NBS‐LRR)‐rich genomic regions of chromosome 19 in poplar
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for … large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific … 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic coordination of multiple actuators reduces latency …
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