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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive … on dead wood decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in … or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthetic algae. But human-induced climate change , a new study suggests, is displacing these important cold-water … and lipids that eukaryotes are.” But according to a new study published September 16, 2021 in Nature … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, …
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Computationally Classifying Fungal Lifestyles
… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  … data from newly sequenced genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The data …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a … instrumental support, how much help can users expect for data analysis of the different omics analysis? Are users expected to be trained to handle the huge amounts of data for each of the different analysis? A:  We go from …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational … advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… JGI podcast, Genome Insider. I’m Alison Takemura. See you next time. …
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Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae
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IMG/M 4 version of the integrated metagenome comparative analysis system
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The minimum information about a genome sequence (MIGS) specification
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … Lentinula genus diverged roughly 28 million years ago, when the largest mammal ever, Paraceratherium, …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… offers a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage … promoter sequences within these gene clusters, offering new regulatory targets for engineering efforts. Importantly, …
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