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The More the Merrier: Making the Case for Plant Pan-genomes
… multiple copies of some genes. This polyploidization process is ongoing and many plants, including agricultural … Universidad de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … B. hybridum  genomes and many  B. distachyon genomes. This builds upon a previously made  B. distachyon pan-genome. A …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… the classroom, JGI researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an … “When I originally envisioned the project of the class, I knew that I wanted them to write a final paper that  could be …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
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Integrating Experimentation with Data
…   Topics will include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled laboratory … more details and registration information. Sign up for our newsletter , the JGI Primer, to stay informed … The JGI and … systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  … A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social media manager for the JGI. She produced both text-based and multimedia stories that were then shared along with other JGI-relevant content on social media. She is also involved …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… (Cyclotron Road company) Hosted by Nigel Mouncey, Director, DOE Joint Genome Institute Read a synthesis from the panel …   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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