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The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … Tanja Woyke (Biology and Biochemistry)  Here’s a selection of studies these busy bees contributed to:  Giant bacteria … crop, as well as the discussion of key cassava genomic resources. Genome annotations for cassava are available on the …
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Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … will help the JGI shape its programs, capabilities, and resources to best meet the broad base of user community needs. … FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA sequencing. As a UEC …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the California oak woodlands from the air, large swaths of the bleached, skeletal remains of trees can be seen. … sequences uncover evolutionary origins and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go … in microbial ecosystems. These communities harbor tens of thousands of different organisms who all consume …
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Strain Engineering
… The focus of this group, in recent years, has been to bring … The developed strains represent an additional phase of user-accessible project types, in which DNA-based … chromosomally integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR …
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the distributed and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … various environments, including oceans, lakes, mammalian guts, forests, and soils, ensuring a robust and … 645.4 Gbp of high-quality contigs from diverse sources, derived from 219 Tb of raw environmental data. …
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Tonoplast sucrose transporter SUT4‐dependent sugar partitioning modulates phenological transitions and reproductive success in poplar
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … researchers previously applied this approach to uncover a novel group of giant viruses dubbed “Klosneuviruses.” … unicellular hosts,” Schulz added. The work also used resources of the  National Energy Research Scientific …
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