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CalTeach
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How Microbes Can Protect Plants in Drier Straits
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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Gene Expression: From On-Off Switch to Dial
… the production of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a particular area in the …
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A Model System for Perennial Grasses
… that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions … summer droughts, these plants were better able to uptake soil water compared to the other plants. The team used QTL …
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Introducing New Members of the JGI User Executive Committee
… He also wants to assist JGI in extending its activity-based cell sorting pipelines to further the link between cellular phenotypes and genotypes. Pawlowska, who studies …
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You Can Move, But You Can’t Hide
… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and … that happen between tiny organisms (microbes) located in soils and water. MGEs like viruses and plasmids drive …
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Open Frameworks Training the Next Generation of Scientists
… identifying fungi in the environment, students can prepare samples for sequencing and analysis at the JGI to help … course structures center around the practices of collecting samples and the generation and analysis of reusable and …
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Forming Scientific Connections and Building Community
… “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : “I got to learn about skills and …
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Mapping the Earth’s Hidden Fungal Kingdom
… evolutionary innovations. Some entire lineages have only a single genome representative, while others remain completely … to identify and classify new species from environmental samples. Meanwhile, even well-studied genomes contain …
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Leo Baumgart
… integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into production … bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on …
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Access to Rock Star Scientists
… UC Merced JGI Mentors : Tanja Woyke & Jessica Jarett, Single Cells Group “My experience at JGI has exposed me to the …
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