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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
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Boosting Small Molecule Production in Super “Soup”
… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … University describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell … products in industry.” From Cell to “Soup” The work started with yeast strains engineered by Alper’s team to convert the …
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An Addiction Crucial to a Fungus’ Reproduction
… researchers investigated the role that bacteria living within a host (endosymbionts) have on fungal host … was predicted to have evolved from a parasitic interaction with their soil fungus host, Rhizopus microsporus . … first needs to secure its own transmission before working with the host. Using the mutualistic relationship between …
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Training the Next Generation of Talent
… JGI researcher, Zhong Wang, have adjunct faculty positions with the SNS, and Wang’s group was hosting another QSB … Visel, the program challenges UC Merced graduate students with individual projects at the DOE JGI that provide … solve research problems. In Visel’s group, Olmstead worked with postdoctoral fellow Ben Cole on a project involving …
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Viruses Reprogram Cells into Different Virocells
… outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … part of efforts to characterize global microbial diversity with an aim to improve predictive ecosystems models, … University’s Matt Sullivan used an experimental approach with a marine phage-host model to study virus-host-nutrient …
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New and Improved: Eucalyptus Reference is Now Accessible
… July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus … in 2014 by a team led by University of Pretoria scientists with help from researchers at the DOE Joint Genome Institute … DNA and RNA sequencing were conducted by the JGI, along with genome assembly and annotation. Genome contiguity of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, HudsonAlpha …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale … evolutionary time and diverse plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute … multiple bioactive compounds at once, including several with known antimicrobial and industrial relevance, along with many previously uncharacterized molecules. To …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems … and to which type of microbe they belonged. The team worked with the U.S. Department of Energy (DOE) Joint Genome … Baldrian’s team distinguished four specific habitats within the forest floor: the leaf litter on top of the soil, …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to … applied before week 9 (flowering); and a control condition, with water being applied weekly throughout the duration of … water to function. Other responses help the plant deal with excess solar radiation. Additionally, in both …
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Leo Baumgart
… Player-Jackson et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE … Selected Publications …
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