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… mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … is Dr. Yi Zhai, and I’m currently working on the effect of plant root exudates in the rhizosphere and microbiome. … to gain hands-on experience in molecular biology and plant functional genomics, because this work is essential for …

… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale … may be submitted at any time as brief white papers. Letters of Intent are not required. Applicants may submit up to two …

… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … fungi and the exoskeleton of insects. It is one of the most commonly found carbon biopolymers in nature, second only to …

… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided … would it be possible to add a feature to look for synteny of the target genome with itself, to identify regions that …

… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome … five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …

… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break … these datasets will assist researchers in moving toward functional genomics studies to learn more about the inner …

… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” … Wilbanks has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and …

… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to develop … Publications … Selected Publications …

… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny … do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up …

… Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP … efforts including systems-based approaches to unravel functional capabilities of plants, microbes and microbial …

…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid hybrid of two species, similar to a mule, but that is still able to …

… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a … from their studied system results in seeing their predicted functional and metabolic roles across global metagenomes …