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…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …

… Back in 2011, JGI-supported researchers published a paper in the journal … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …

… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… Populations of Antarctic lake microbial communities change with … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … of light and salinity in this portion of the lake provides everything the bacteria needs to survive. In December, …

… RIViT-seq technology could speed up associating transcription factors with their target genes. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi …

… The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints for … entire metabolism for chemical production, the study provides a blueprint that engineers can use to design more … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …

… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with each other in a public forum. Second, SMC provides an opportunity for users to publicly engage with each …

… metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … and their genomes then amplified and sequenced individually, offering scientists the opportunity to apply … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …

… in early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … and the archaeal lineages found there and elsewhere provide researchers with insights into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University …

… A genetic architecture that is characteristic of the sex chromosomes of mammals is, … at West Virginia University (WVU), led the study’s international team, which included scientists from Oak Ridge … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … marine food web, forming the base of the food chain and providing energy for a slew of marine organisms, as well as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …