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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The … The work is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … Office of the President. This work was part of the DOE Joint BioEnergy Institute ( http://www.jbei.org ) …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start …
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Improving genome assemblies by sequencing PCR products with PacBio
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“A STEM career is in reach and accessible”
… High School. Though a partnership with Biotech Partners, a nonprofit that provides underserved youth in the Bay Area with personal, academic and professional development experiences that … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted … by short final presentations attended by more than 75 JGI staff. According to Axel Visel and Zhong Wang, founders …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. … S., Pelikan, C., Scannell, D., Serber, Z., Shock, J., Sneddon, M., and Yang, X. Metagenomic library and natural product …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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