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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this … Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … Free-Living Growth and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The … the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources … is available — enabling metadata-driven scientific discoveries. GOLD’s  public Application Programming …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the … and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established …
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User Advisory Committees
… we nurture in our workplace and seek to establish with our stakeholders. The guiding principles for … community, and promotes communication and collaboration within the user community. …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less salt — near the surface where algae grow. Armed with a better understanding of the alga’s stress resistance … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed …
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Forming Scientific Connections and Building Community
… had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed … Being an intern here has allowed me to make connections with the top of the top scientists in their fields. I have … great meeting the wonderful people who work at JGI and learning about their research.” Mentor: Juan C. Villada …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community Science Program Large Scale call. This … next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering heat-resilient algae for … Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic … external illumination, making them difficult to use inside deep tissues. Additionally, all plants, many bacterial … 1) complementation of split luciferase (CSL) and, 2) bioluminescence resonance energy transfer (BRET)-based …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … the full kingdom, they are well-suited to train machine learning models that predict biological traits from DNA … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of 100 times the size of what has typically been associated with viruses, while the genomes of large viruses may be only … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in …
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Webinar: MycoCosm Tutorial
… on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … https://phycocosm.jgi.doe.gov/oomycota ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are …
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