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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in … 2013 Nature paper , which uncovered nearly 30 major previously uncharted branches of the tree of life. A senior scientist at …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group … and our institutional website.   Mr. Wilson brings a user-centered approach, an ability to work with others to … with the Informatics Department to develop software that pushed instrument run information directly into the database …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… bacterial interactions with animals and plants, or cause metal corrosion in oil pipes. Scientists have tried to … network that drives bacterial colonization and motility. By building on a previously developed combined approach, … 1) complementation of split luciferase (CSL) and, 2) bioluminescence resonance energy transfer (BRET)-based …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … between.” To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based … for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab researchers …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
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DAS Tool for Genome Reconstruction from Metagenomes
… of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … of California, Berkeley and involving JGI researchers, reported on the development and validation of a …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have fully … precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an … ’s reduced genomic complexity can accelerate the design-build-test cycle for metabolic engineering. The discovery …
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Exploring Polymorphisms Created by Transposable Elements
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging … twice the size of the largest fungal mitochondrial genome reported before this study. A statistical comparison of …
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