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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals … mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about …
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User Executive Committee
The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into … and function. These species are carefully selected by the community to evenly sample the diversity of the plant … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint … DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of the things I did want to … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … launched as an interactive public database for the research community. With more than 13 million BGCs in the catalog at … time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … engineering workflows. … The IMG/M system serves as a community resource for comparative analysis and annotation …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a … carbon cycling and biogeochemistry. In complement to the Community Science Program, JGI researchers drive innovations … Data Science & Informatics. The JGI also sustains a vibrant community of postdoctoral and early career researchers. …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the …
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