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New and Improved: Eucalyptus Reference is Now Accessible
… The work (proposal: 10.46936/10.25585/60008105, WIP proposal ID: 508017, Myburg, Wegrzyn, … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …
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Protocols
… iTag protocols: …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing … over ecological and evolutionary time scales.The Metagenome Program combines large-scale, time-series …
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Tapping the treasure trove of atypical phages
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Webinar: PhycoCosm Tutorial
… to do manual annotation – not covered in these tutorials 6.  Q: On the genome synteny page, would it be possible to add a feature to look for … usually in the dropdown of available targets on the synteny page. 7.  Q: What is the success rate for CSP? What makes a …
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Silver age of GOLD introduces new features
… new features like a public API and ecosystem landing page, as well as the growth of different entities,  further …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces … v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome v13. Below …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in March 2027 at the Oakland Convention Center. Check this page as further details become available. Sign up for our …
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Natural Prodcast Episode 9: Roger Linington
… the idea that you could go internationally to do the next stage of your training and that there might be more to be … how best to begin. And so in the end, we did it in several stages. So we started out internally by making a list on the … a sort of front end tool, so it’s being used as the first stage in discovery. There are so many different ways that you …
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Finding the Fermenters
… records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative … also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the … This work was supported by the United States Department of Agriculture National Institute of Food and Agriculture grant …
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Natural Prodcast Episode 5: Brad Moore
… at the University of Hawaii and moved there in the early ’60s from Berkeley to work on this new budding field of … marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics … would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned …
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