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… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This … penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of …

Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … we get to present our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …

… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …

DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal … Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution …

… scientific community and require constant developments to meet the ever-changing demands of our users. … Download … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …

Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … skills necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for …