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Natural Prodcast Episode 23: Aaron Puri
… now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … conversation with Aaron Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so … specialized niche. So there’s certainly going to be some competition there. The other thing I’m really fascinated by …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
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JGI Portals
… scientific community and require constant developments to meet the ever-changing demands of our users. … Download … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …
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The Fungi That Survive In Antarctica
Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … skills necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for …
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of Conduct. Event organizers … Participants violating these rules may be expelled from the event at the discretion of the event staff. … and actions. Attempt collaboration before conflict. Refrain from demeaning, discriminatory, or harassing behavior and …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China … part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … above forest soils, but the nutritional association between mycorrhizal fungi and tree roots as well. This might be one …
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MycoCosm portal: gearing up for 1000 fungal genomes
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Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis
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Igor Grigoriev
DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal … Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution …
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Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
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