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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … small peptide. So at a certain point, a couple of different groups noticed that they could take all of these adenylation …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint … One of the organisms that I studied in the past were a group of bacteria called the Frankia . And so the Frankia … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing … The project was funded by the U.S. Department of Energy Joint Genome … of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of … colors. I mean, where else in nature– and they’re not fungal. Where else nature can you go see colonies of … at this point. So no company would ever be interested in developing them, doing the substantial amount of effort to …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric genomic science user facility …
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CalTeach
… CalTeach is a program for undergraduate majors interested in developing … Past projects …   Internship Snapshots   …
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JGI-TMF Critical Minerals and Materials Call
… The joint Critical Minerals and Materials call represents a unique opportunity for … with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that … Proposals should be submitted through the Molecular Foundry User Portal . All proposals undergo technical …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … along the journey. And so I started my PhD in Brad Moore’s group and joined his lab when he was at University of … not enough time and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality …
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