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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … for User Science (FICUS) initiative . In this program, researchers leverage the capabilities of more than …
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JGI announces second round of 2023 New Investigator awardees
… proposals — through the New Investigator call under our Community Science Program .  Below find a list of the second round of …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … with us; and, Make virome data available to the research community. Kyrpides’ project, “ Advanced analytics for …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … senior author  Tanja Woyke , who heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available … from several DOE-mission relevant proposals through JGI’s  Community Science Program . Proposals from researchers at …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …
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A Sorghum Pangenome Opens More Doors to Discovery
… Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work with Nadia … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … from a much broader view than ever before. With this information, researchers can link genetic variation more …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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JGI announces 2024 New Investigator portfolio
… proposals — through the New Investigator call under our Community Science Program . Below find a list of researchers whose proposals … in the December 2024 review. You can also find more information about the JGI’s various proposal calls here. …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI … would work well in further experiments, so she could glean information about their specific function, filling in our …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … These tools give researchers a way to access much more information about fungi in these environments. “Now with …
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An Automated Tool for Assessing Virus Data Quality
… the completeness of these sequences and complements a community effort to develop guidelines and best practices … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … cannot be cultivated in lab settings. Since each microbial community has its own unique makeup of microbe players and … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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