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… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …

… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … The phyllosphere, which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on …

… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new … moving to Berkeley, the JGI committed to using Stirling freezers to store samples, which use less than half as much … at Berkeley Lab, Doina Ciobanu generally works at a single-cell level as part of the JGI MicroScale Applications team. …

… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a …

… ActinoBase offers a public portal of insight into special groups of actinobacteria … challenges working with actinobacteria and serves as a freely accessible resource that taps into a global network … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …

… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … both haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has … genomic analyses.   The Impact There are 900 species of eucalyptus. The trees are fast-growing plantation crops …

… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and regulating the global climate … to flourish. For Guillaume Borrel and Simonetta Gribaldo of the Institut Pasteur in France, the importance of …

… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … time course data from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. …

… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … two vectors,” said Sevim.  While there are alignment-free methods for nucleotide searches, such as  Mash and  …

… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their … global RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity …

… organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …