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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who … also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley … from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … Berkeley Lab. Moreover, follow-up meetings, agreements on exchange of materials and samples as well as research visits …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental processes. The Science In … surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added … for the past year and a half, “the logistics haven’t changed,” noted Northwestern graduate student Blake Rasor. …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. … Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, … 1. Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to … plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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