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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy … can also be hybridized to produce desirable traits.  Partly enabled by the JGI  Community Science Program New … in   iron deficiency response, formation of secondary cell walls (biosynthesis), and integrating molecules that …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … a recent Nature Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal … plants (endophytes). These include genes that degrade plant cell walls and break down plant sugars. The results also …
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … begins on the genome. This revealed a sweeping cellular response: The bacterium absorbs potassium ions to …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics
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Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
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