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… This webinar focused on how the JGI employs single-molecule, … to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only …

… Developing and validating an integrated approach to genome recovery … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving …

… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are …

… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. …

… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at …

… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … Blurring the Line Between Plasmids and Phages … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes … Exploring and Visualizing P. hallii Mutant Library …

… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …

… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at …

… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package …

… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … group at the JGI to further explore the ecological and evolutionary drivers of virus-host dynamics in soil … B.S. in Microbiology, Université Blaise Pascal, France M.S. in …

… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … to learn more about the program's areas of focus, major initiatives and more.  …

… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  … B.E. in Biological Science and Technology, Tokyo University of …