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Calculating the Costs of Multiple Switchgrass Gene Copies
… could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped … hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common gardens. We … like switchgrass respond to pronounced climate shifts. (C4 plants use a more efficient form of photosynthesis that …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. … (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and hitchhiker genomes for …
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Supporting Global Research into Actinomycetes
… in soil and can be used as biocontrol agents and to promote plant growth. It is the largest genus within Actinobacteria …
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2025 Progress Report
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of … relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  KBase Co-PI Bob …
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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The … of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present … genomic sequence information to BER funded activities of plant systems. We will describe how to apply for a project …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Team Science Reveals Important Protein in Poplar
… a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, and disease resistance.  … the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome … and bioenergy applications. Poplars grow quickly and the plants can be crossed to produce traits that make them more …
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Dispatches From JGI Interns
… JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans … one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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