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… and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department …

… techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , … Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …

Bob uses single-cell genomics and metagenomics to explore how microbes influence people and …

Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …

Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and … Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management … I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic …

… to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …

… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s national science agency CSIRO, the French Agricultural Research …

… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have …

… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … through an award to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute and the …

… representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list … activities of plant systems that make use of these resources will present on their work. BER Plant Genomic Science …

… of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …

Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the … Nature 590: 438-444. Mamidi, S et al. 2020. A genome resource for green millet Setaria viridis enables discovery of …