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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. … , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy …
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Busting the Unbreakable Lignin
… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat bogs also serve the … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Comparative Analysis of 126 Cyanobacterial Genomes Reveals Evidence of Functional Diversity Among Homologs of the Redox-Regulated CP12 Protein    
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) … increasingly collaborative and multidisciplinary nature of DOE mission science projects, this proposal call aims to …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … and sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … postdoctoral researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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